Skip to main content

Table 1 The detailed information of shared SNPs between rheumatoid arthritis and cardiovascular diseases

From: Characterizing the polygenic overlap and shared loci between rheumatoid arthritis and cardiovascular diseases

Locus

Lead SNP

CVD traits

CHR

Position

Effect allele

Other allele

Annotation

Candidate gene

1

rs2843151

CAD

1

2,245,633

C

T

Intergenic

NA

2

rs12022363

HF

1

38,252,609

G

A

Intergenic

NA

3

rs11552449

CAD

1

114,448,389

T

C

Exonic

DCLRE1B (e)

4

rs12126142

AF; CAD

1

154,425,456

A

G

Intronic

IL6R (c,e)

5

rs62149420

AF; HF

2

61,094,810

G

A

ncRNA_intronic

LINC01185

6

rs4563251

AF

2

70,251,490

C

T

ncRNA_intronic

PCBP1-AS1 (e)

7

rs700677

AF

2

198,702,424

A

C

Intronic

PLCL1 (e)

8

rs2454429

AF

3

12,620,720

G

A

Intronic

MKRN2 (e)

9

rs2905734

HF

6

31,453,711

C

A

ncRNA_intronic

MICB-DT

9

rs409558

AF

6

31,708,147

C

T

ncRNA_intronic

MSH5-SAPCD1

9

rs3130683

CAD

6

31,888,367

C

T

Intronic

C2

10

rs2772373

Stroke

6

33,429,672

G

A

Intergenic

ZBTB9 (e), BAK1 (e)

11

rs42034

AF

7

92,239,144

G

A

3′UTR

CDK6 (c)

11

rs42039

Stroke

7

92,244,422

T

C

3′UTR

CDK6 (c)

12

rs13277738

AF

8

18,241,507

T

C

Intergenic

NAT2 (e)

13

rs4750517

CAD

10

6,520,458

G

A

Intronic

PRKCQ (e)

14

rs4749532

CAD

10

30,418,323

T

C

Intergenic

NA

15

rs7098414

CAD

10

82,214,586

A

C

Intronic

TSPAN14 (e)

16

rs10840298

CAD

11

9,764,832

C

A

Intronic

SWAP70 (c,e)

17

rs10774624

Stroke; CAD; HF

12

111,833,788

G

A

Intergenic

PHETA1 (e), SH2B3 (e)

18

rs12919951

CAD

16

75,306,890

G

A

Intergenic

BCAR1 (e), CFDP1(e)

19

rs8075737

CAD

17

37,727,316

T

C

Intergenic

CDK12 (c,e)

19

rs9747973

AF

17

37,905,107

T

C

Intergenic

IKZF3 (e)

19

rs11658278

HF

17

38,031,164

T

C

Intronic

ZPBP2 (e)

20

rs7248558

Stroke; CAD

19

10,770,292

A

G

Intronic

ILF3 (e)

21

rs2421206

CAD

19

11,262,477

G

T

Intronic

SPC24 (e)

22

rs2297199

AF

20

44,674,743

C

A

Intronic

SLC12A5

23

rs6074012

Stroke

20

44,700,166

T

C

Intronic

NCOA5

  1. The candidate genes with Hi-C evidence were marked by “c”, while those with eQTL evidence were marked by “e”
  2. Abbreviations: AF, atrial fibrillation; CAD, coronary artery disease; CVD, cardiovascular diseases; HF, heart failure; RA, rheumatoid arthritis